Микрокосм. E. coli и новая наука о жизни - Карл Циммер

F. R. Blattner. 2001. Genome sequence of enterohaemorrhagic Escherichia coli 0157: H7. Nature 409 (6819):529-33.

Perron, G. G., M. Zasloff, and G. Bell. 2006. Experimental evolution of resistance to an antimicrobial peptide. Proc Biol Sei 273 (1583):251—56.

Peschel, A., and H. G. Sahl. 2006. The co‑evolution of host cationic antimicrobial pep- tides and microbial resistance. Nat Rev Microbiol

4 (7):529-36.

Ponder, R. G., N. C. Fonville, and S. M. Rosenberg. 2005. A switch from high‑fidelity to error‑prone DNA double‑strand break repair underlies stress‑induced mutation. Mol Cell 19 (6):791–804.

Potrykus, I. 2001. Golden Rice and beyond. Plant Physiol 125

(3):1157—61.

Power, M. L., J. Littlefield‑Wyer, D. M. Gordon, D. A. Veal, and M. B. Slade. 2005. Phe- notypic and genotypic characterization of encapsulated Escherichia eoli isolated from blooms in two Australian lakes. Environ Microbiol 7 (5):631—40.

Queitsch, C., T. A. Sangster, and S. Lindquist. 2002. Hsp90 as a capacitor of phenotypic variation. Nature 417 (6889):618-24.

Raney, T. 2006. Economic impact of transgenic crops in developing countries. Curr Opin Biotechnol 17 (2):174—78.

Rangel, J. M., P. H. Sparling, C. Crowe, P. M. Griffin, and

D. L. Swerdlow. 2005. Epi- demiology of Escherichia eoli 0157: H7 outbreaks, United States, 1982–2002. Emerg Infect Dis 11 (4):603-9.

Raser, J. M., and E. K. O’Shea. 2005. Noise in gene expression: Origins, consequences, and control. Science 309 (5743):2010—13.

Rasheed, J. К., С. Jay, В. Metchock, F. Berkowitz, L. Weigel, J. Crellin,

C. Steward, B. Hill, A. A. Medeiros, and F. C. Tenover. 1997. Evolution of extended‑spectrum beta- lactam resistance (SHV-8) in a strain of Escherichia eoli during multiple episodes of bacteremia. Antimicrob Agents Chemother4 (3):647—53.

Raymond, J., and D. Segre. 2006. The effect of oxygen on biochemical networks and the evolution of complex life. Science 311 (5768):1764-67.

Reinhold, Robert. 1969. Scientists isolate a gene: Steps in heredity control. New York Times, November 22,1969.

Reisner, A., K. A. Krogfelt, B. M. Klein, E. L. Zechner, and S. Molin. 2006. In vitro biofilm formation of commensal and pathogenic Escherichia eoli strains: Impact of environmental and genetic factors. fBacteriol 188 (10):3572-81.

Remold, S. Κ., and R. E. Lenski. 2004. Pervasive joint influence of epistasis and plastic- ity on mutational effects in Escherichia eoli. Nat Genet 36 (4):423-26.

Ren, C. R, S. A. Beatson, J. Parkhill, and M. J. Pallen. 2005. The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. JBacteriol 187

(4):1430—40.

Roberts, Richard B. 1955. Studies of biosynthesis in Escherichia coli. Washington, D. C.: Carnegie Institution.

Robicsek, A., J. Strahilevitz, G. A. Jacoby, M. Macielag, D. Abbanat,

C. H. Park, K. Bush, and D. C. Hooper. 2006. Fluoroquinolone- modifying enzyme: A new adaptation of a common aminoglycoside acetyltransferase. Nat Med 12 (1):83–88.

Rogers, Michael. 1977. Biohazard. New York: Alfred A. Knopf.

Roth, J. R., E. Kugelberg, A. B. Reams, E. Kofoid, and D. I. Andersson.

2006. Origin of mutations under selection: The adaptive mutation controversy. Annu Rev Microbiol 60:477–501.

Rozen, D. E., D. Schneider, and R. E. Lenski. 2005. Long‑term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphism./Mol Evol 61 (2):171—80.

Salyers, Abigail A., and Dixie D. Whitt. 2005. Revenge of the microbes: How bacterial resistance is undermining the antibiotic miracle. Washington, D. C.: ASM Press.

Sandermann, H. 2006. Plant biotechnology: Ecological case studies on herbicide resistance. Trends Plant Sei 11 (7):324-28.

Sansonetti, P. J. 2006. Shigellosis: An old disease in new clothes? PLoSMed 3(9):e354.

Sapp, J. 1994. Evolution by association: A history of symbiosis. New York: Oxford University Press.

2005. The prokaryote‑eukaryote dichotomy: Meanings and

mythology.

Microbiol Mol Biol Rev 69 (2):292–305.

Sauer, U. 2006. Metabolic networks in motion: 13C‑based flux analysis. Mol SystBiol 2:62.

Sauer, U., M. Heinemann, and N. Zamboni. 2007. Genetics: Getting closer to the whole picture. Science 316 (5824):550-51.

Schaechter, Moselio, John L. Ingraham, and Frederick C. Neidhardt.

2006. Microbe. Washington, D. C.: ASM Press.

Schnapp, N., and Q. Schiermeier. 2001. Critics claim “sight‑saving” rice is over‑rated. Nature 410 (6828):503.

Schneider, D., and R. E. Lenski. 2004. Dynamics of insertion sequence elements during experimental evolution of bacteria. Res Microbiol 155 (5):319-27.

Scott, С. T. 2006. Chimeras in the crosshairs. Nat Biotechnol 24

(5):487—90.

Segerstrale, Ullica. In press. Nature’s oracle: A life ofW. D. Hamilton. Oxford: Oxford University Press.

Service, Robert F. 2003. Researchers create first autonomous synthetic life form. Science

299 (5607):640.

2007. A growing threat down on the farm. Science 316

(5828):1114—17.

Shaikh, N., and P. I. Tarr. 2003. Escherichia eoli 0157: H7 Shiga toxin — encoding bacteriophages: Integrations, excisions, truncations, and evolutionary implications. JBacteriol 185 (12):3596—605.

Shapiro, J., L. Machattie, L. Eron, G. Ihler, K. Ippen, and J. Beckwith. 1969. Isolation of pure lac operon DNA. Nature 224 (5221):768-74.

Shi, W., and D. R. Zusman. 1993. Fatal attraction. Nature 366 (6454):414-15.

Shin, T., D. Kraemer, J. Pryor, L. Liu, J. Rugila, L. Howe, S. Buck, K. Murphy, L. Lyons, and M. Westhusin. 2002. A cat cloned by nuclear transplantation. Nature 415 (6874):859. Shnayerson, Michael, and Mark J. Plotkin. 2002. The killers within: The deadly rise of drug — resistant bacteria. Boston: Little, Brown.

Silver, Lee M. 2006. Challenging nature: The clash of science and spirituality at the fron —

tiers of life. New York: Ecco.

Sinervo, B. 2001. Runaway social games, genetic cycles driven by alternative male and female strategies, and the origin of morphs. Genetica 112-13:417-34.

Singer, M. 2001. What did the Asilomar exercise accomplish, what did it leave undone? PerspectBiol Med 44 (2):186-91.

Spencer, C. C., M. Bertrand, M. Travisano, and M. Doebeli.

2007. Adaptive diversifica- tion in genes that regulate resource use in Escherichia eoli. PLoS Genet 3 (l):el5. Spudich, J. L., and

D. E. Koshland Jr. 1976. Non‑genetic individuality: Chance in the single cell. Nature 262 (5568):467-71.

Stahl, Franklin W. 2001. Alfred Day Hershey. Biographical Memoirs 80. Washington, D. C.: National Academy Press.

Stein, A. J., H. P. Sachdev, and M. Qaim. 2006. Potential impact and cost‑effectiveness of Golden Rice. Nat Biotechnol 24 (10):1200–1201.

Stenuit, B., L. Eyers, R. Rozenberg, J. L. Habib‑Jiwan, and S. N. Agathos. 2006. Aerobic growth of Escherichia eoli with 2,4,6–trinitrotoluene (TNT) as the sole nitrogen source and evidence of TNT denitration by whole cells and cell‑free extracts. Appl Environ Microbiol 72 (12):7945-48.

Stewart, E. J., R. Madden, G. Paul, and F. Taddei. 2005. Aging and death in an organism that reproduces by morphologically symmetric division. PLoS Biol 3 (2):e45.

Sullivan, Woodruff T., and John Baross, eds. 2007. Planets and life: The emerging science of astrobiology. New York: Cambridge University Press.

Talbot, M. 2005. Darwin in the dock. New Yorker, December 5,2005.

TalkOrigins Archive. 2006. Kitzmiller v. Dover Area School District, Dover, Pennsylvania

Intelligent Design Case, http://talkorigins.org/faqs/dover/kitz miller jv dover. html. Tanaka, R., M. Csete, and J. Doyle. 2005. Highly optimised global organisation of metabolic networks. Syst Biol (Stevenage) 152 (4):179-84.

Tarr, P. I., C. A. Gordon, and W. L. Chandler. 2005. Shiga‑toxin- producing Escherichia coli and haemolytic uraemic syndrome. Lancet 365 (9464):1073-86.

Tatum, E. L., and J. Lederberg. 1947. Gene recombination in the bacterium Escherichia coli. JBacteriol 53 (6):673-84.

Tenaillon, О., E. Denamur, and I. Matic. 2004. Evolutionary significance of stress- induced mutagenesis in bacteria. Trends Microbiol 12 (6):264-70.

Tenover, F. C. 2006. Mechanisms of antimicrobial resistance in bacteria. Am JMed 119 (6 Suppl. 1):S3-10, discussion S62-70.

Thanbichler, M., and L. Shapiro. 2006. Chromosome organization and segregation in bacteria./Struct Biol 156 (2):292–303.

Thiem, S., D. Kentner, and V. Sourjik. 2007. Positioning of chemosensory clusters in E. coli and its relation to cell division. Embo /26 (6):1615—23.

Thomas, W. E., L. M. Nilsson, M. Forero, E. V. Sokurenko, and V. Vogel. 2004. Shear- dependent “stick‑and‑roll” adhesion of type 1 fimbriated Escherichia coli. Mol Microbiol 53 (5):1545-57.

Thornton, I. W. B. 1996. Krakatau: The destruction and reassembly of an island ecosystem. Cambridge, Mass.: Harvard University Press.

Tomitani, A., A. H. Knoll, C. M. Cavanaugh, and T. Ohno. 2006. The evolutionary diversification of cyanobacteria: Molecular- phylogenetic and paleontological per- spectives. Proc Natl Acad Sei USA 103 (14):5442-47.

Travisano, М., J. A. Mongold, A. F. Bennett, and R. E. Lenski. 1995. Experimental tests of the roles of adaptation, chance, and history in evolution. Science 267 (5194):87–90.

Trinh, C. T., R. Carlson, A. Wlaschin, and F. Srienc. 2006. Design, construction and performance of the most efficient biomass- producing E. eoli bacterium. Metab Eng 8 (6):628—38.

U. S. Congress. Senate. 2005. Human Chimera Prohibition Act of 2005. S 659.109th Cong., 1st sess.

U. S. Department of Health and Human Services, Centers for Disease Control and Pre- vention. 2006. Multi‑state outbreak of

E. eoli 0157: H7 infections from spinach. September — October. http://www.cdc.gov/ecoli2006/September/.

Van Till, Howard J. 2002. E. eoli at the No Free Lunchroom: Bacterial flagella and Dembski’s case for intelligent design. American Association for the Advancement of Science. http://www.aaas.org/spp/dser /03_Areas/evolution/perspectives/ vantillecoli_2002.pdf.

Varma, J. K., K. D. Greene, M. E. Relier, S. M. DeLong, J. Trottier, S. F. Nowicki, M. DiOrio, E. M. Koch, T. L. Bannerman, S. T. York, M. A. Lambert‑Fair, J. G. Wells, and P. S. Mead. 2003. An outbreak of Escherichia eoli 0157 infection following expo- sure to a contaminated building./АМА 290 (20):2709-12.

Vulic', M., and R. Kolter. 2001. Evolutionary cheating in Escherichia eoli stationary phase cultures. Genetics 158 (2):519-26.

Wade, Nicholas. 1977. The ultimate experiment: Man‑made evolution. New York: Walker.

Walters, M., and V. Sperandio. 2006. Quorum sensing in Escherichia eoli and Salmonella. Int J Med Microbiol 296 (2–3):125—31.

Wandersman, C., and P. Delepelaire. 2004. Bacterial iron sources: From siderophores to hemophores. Annu Rev Microbiol 58:611-47.

Wang, L., J. Xie, and P. G. Schultz. 2006. Expanding the genetic code. Annu Rev Biophys Biomol Struct 35:225-49.

Warmflash, D., and B. Weiss. 2005. Did life come from another world? Sei Am 293(5):64–71.

Watanabe, T. 1963. Infective heredity of multiple drug resistance in bacteria. BacteriolRev 27:87-115.

Watson, James D. 1969. The double helix: A personal account of the discovery of the structure of DNA. New York: New American Library.

Watson, James D., and John Tooze. 1981. The DNA story: A documentary history of genecloning. San Francisco: W. H. Freeman.

Welch, R. A., V. Burland, G. Plunkett III, P. Redford, P. Roesch,

D. Rasko, E. L. Buckles, S. R. Liou, A. Boutin, J. Hackett, D. Stroud,

G. F. Mayhew, D. J. Rose, S. Zhou, D. C. Schwartz, N. T. Perna, H. L. Mobley, M. S. Donnenberg, and F. R. Blattner. 2002. Extensive mosaic structure revealed by the complete genome sequence of uropath- ogenic Escherichia coli. Proc Natl Acad Sei USA 99 (26):17020-24.

Wells, H. G. 1896. The island of Dr. Moreau. Garden City, N. Y.: Garden City Publishing.

West, S. A., A. S. Griffin, A. Gardner, and S. P. Diggle. 2006. Social evolution theory for microorganisms. Nat Rev Microbiol 4 (8):597–607.

White‑Ziegler, C. A., A. J. Malhowski, and S. Young. 2007. Human body temperature (37 C) increases the expression of iron, carbohydrate, and amino acid utilization genes in Escherichia coli K-12 .JBacteriol 189:5429-40.

Wick, L. M., W. Qi, D. W. Lacher, and T. S. Whittam. 2005. Evolution of genomic content in the stepwise emergence of Escherichia coli 0157: W. JBacteriol 187 (5):1783-91.

Willenbrock, H., and D. W. Ussery. 2004. Chromatin architecture and gene expression in Escherichia coli. Genome Biol 5 (12):252.

Williams, G. C. 1966. Adaptation and natural selection. Princeton: Princeton University Press.