Виролюция. Важнейшая книга об эволюции после «Эгоистичного гена» Ричарда Докинза - Фрэнк Райан

96

Márquez L.M., Redman R. S., Rodriguez R. J., Roossinck M.J. A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance. Science 2007; 315: 513–515.

97

Villarreal L.P. Viral persistence and symbiosis: are they related? Symbiosis 2007; 43:1–9. Ryan F.P. Viruses as symbionts. Symbiosis 2007; 44: 11–21.

98

Ryan F. Р. Genomic creativity and natural selection: a modern synthesis. Biological Journal of the Linnean Society 2006; 88: 655–672

99

Feder M.E. Evolvability of physiological and biochemical traits: evolutionary mechanisms including and beyond singlenucleotide mutation. Journal of Experimental Biology 2007; 210:1653–60.

100

Ryan F. Genomic creativity and natural selection: a modern synthesis. Biological Journal of the Linnean Society 2006; 88: 655–672.

101

Muller H. J. Why polyploidy is rarer in animals than in plants. American Naturalist 1925; 59; 346–353.

102

Rieseberg L.H. Homoploid reticulate evolution in Helianthus: evidence from ribosomal genes. American Journal of Botany 1991; 78:1218–37.

103

Rieseberg L. H., Raymond O., Rosenthal D.M., et al. Major ecological transitions in annual sunflowers facilitated by hybridisation. Science 2003; 301: 1211–1216.

104

Ananthaswamy A. Hybrids survival in the desert. New Scientist 2003,16 August: 12–13.

105

Soltis D.E., Soltis P. S. Polyploidy: recurrent formation and genome evolution. TREE 1999; 14: 348–352.

106

Arnold M. L. Natural Hybridisation and Evolution. Oxford: Oxford University Press 1997: 7. См. также, Martinson G. D., Whitham T.G., Rurek R. J., Keim P. Hybrid populations selectively filter gene introgression between species. Evolution 2001; 55: 1325–1335.

107

Аллели — различные формы одного и того же гена, определяющие альтернативные варианты развития одного и того же признака. — Прим. ред.

108

Mavárez J., Salazar С. А, Bermingham E., Salcedo С., Jiggins C.D. Speciation by hybridization in Helioconius butterflies. Nature 2006;441: 868–71.

109

Gompert Z., Fordyce J.A., Forister M.L., et al. Homoploid hybrid speciation in an extreme habitat. Science 2006; 314: 1923–5.

110

Mable В.К., Bogart J. Р. Hybridization between tetraploid and diploid species of tree frogs (genus Hyla). Journal of Heredity 1995; 86: 432–440.

111

Mable В.К., Bogart J. Р. Call analysis of triploid hybrids resulting from diploid-tetraploid species crosses of hylid tree frogs. Bioacoustics 1991; 3:111–119.

112

Cornai L. The advantages and disadvantages of being polyploid. Nature Reviews Genetics 2005; 6: 836–846.

113

Gallardo M.H., Bickham J.W., Honeycutt R. L., et al. Discovery of tetraploidy in a mammal. Nature 1999; 401: 341.

114

Gallardo M.H., Kirsch J.W. A. Molecular relationships among Octodontidae (Mam malia: Rodentia: Cav iomorpha). Journal of Mammalian Evolution 2001; 8: 73–89.

115

Gallardo M.H., Kausel G., Jiménez A., et al. Whole-genome duplications in South American desert rodents (Octodontidae). Biological Journal of the Linnean Society 2004; 82: 443–451.

116

Название этой главы взято из статьи Spring J. Hypothesis. Vertebrate evolution by interspecific hybridisation — are we polyploid? Federation of European Biochemical Sciences Letters 1997; 400: 2–8

117

Ohno S. Evolution by Gene Duplication. New York: Springer Verlag, 1970.

118

Patterson N., Richter D. J., Gnerre S., et al. Genetic evidence for complex speciation of humans and chimpanzees. Nature 2006;441:1103–8.

119

Our human history. New York Times 22 May 2006, Editorial.

120

Detwiller K. M., Burrell A.S., Jolly C.J. Conservation implications of hybridization in African primates. American Society of Primatologists Conference 2003, abstract #127.

121

Whitfield J. Lovers, not fighters? New genetic signs that modern humans mated with Homo erectus. Scientific American March 2008; 21.

122

Saey T. Н. First rough draft of Neanderthal genome released. Science News Web Edition 12 February 2009.

123

Ferrier D.E.K., Minguillón C. Evolution of the Hox / ParaHox gene clusters. International Journal of Developmental Biology 2003; 47: 605–611.

124

Gibson T. J., Spring J. Evolution of sequences, structures and genomes. Biochemical Society Transactions 2000; 28 (2): 259–264.

125

Brooke N. M., Garcia-Fernandez J., Holland P. W. H. The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature 1998; 392: 920–922. See also, Pebusque M.J., Coulier F., Birnhaum D., Pontarotti P. Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution. Molecular Biology and Evolution 1998; 15: 1145–59.

126

McLysaght A., Hokamp K., Wolfe К. H. Extensive genomic duplication during early chordate evolution. Nature Genetics 2002; 2: 128–129.

127

Более подробное описание этих исследований и дальнейшие ссылки можно найти в работе: Ryan F.P. An alternative approach to medical genetics based on modern evolutionary biology. Part 5: epigenetics and genomic duplications. Journal of the Royal Society of Medicine 2009: (in press).

128

Check E. Mix and match: the hunt for what makes us human. Nature «News» 2006; 443: 8.

129

Holmes В. Magic Numbers. New Scientist 8 April 2006: 38–41.

130

Bernaud R., Boyer A., Nègre., et al. Prenatal detection of the 17p11.2 duplication in Charcot-Marie-Tooth disease type 1A: necessity of a multidisciplinary approach for heterogeneous disorders. European Journal of Human Genetics 2002; 10: 297–302.

131

Lucito R., Healy J., Alexander J., et al. Large scale copy number polymorphisms in the human genome. Science 305: 525–528.

132

Redon R., Ishikawa S., Fitch K. R. Global variation in copy number in the human genome. Nature 2006; 444: 444–456.

133

Baird P. А.Reducing birth defects in populations. Centre for Health Services and Policy Research, The University of British Columbia, January 1999. HPRU 99: 4D. http://www.chspr.ubc.ca/files/pubhcations/1999/hpru99-04D.pdf.

134

Yamamoto А., Lucas J.J., Hen R. Reversal of neuropathology and motor dysfunction in a conditional model of Huntington’s disease. Cell 2000: 101: 57–66.

135

PubMed — англоязычная текстовая база данных медицинских и биологических публикаций, созданная Национальным центром биотехнологической информации (NCBI) США на основе раздела «биотехнология» Национальной медицинской библиотеки США. — Прим. ред.

136

Weissmann G. Fashions in science: from philosophers’ camp to epigenetics. The Federation of American Societies for Experimental Biology (FASB) Journal 2008; 22: 4033–7.

137

Телеология — философское учение о целесообразности бытия, оперирующее наличием разумной воли Творца или внутренней силы, потенциально заключающей в себе цель и окончательный результат. — Прим. ред.

138

Stern C.D. Conrad H. Waddington’s contributions to avian and mammalian development, 1930–1940. International Journal of Developmental Biology, 2000; 44: 15–23.

139

Уоддингтон ввел термин «эпигенетический» в своей книге «An introduction to Modem Genetics». London: Allen & Unwin, 1939: 154–156.

140

Spadafora C. A reverse transcriptase-dependent mechanism plays central roles in fundamental biological processes. Systems Biology in Reproductive Medicine 2008; 54: 11–21.

141

Nanney D.L. Epigenetic control systems. Proceedings of the National Academy of Sciences 1958; 44; 712–717.

142

Lyon M. F. Gene action in the X-chromosome of the Mouse (Mus musculus L). Nature 1961; 190: 372–373.

143

Holliday R., Pugh J. Е. DNA modification mechanisms and gene activity during development. Science 1975; 187: 226–232.

144

Riggs A. D. X inactivation, differentiation and DNA methylation. Cytogenetics and Cell Genetics 1975; 14: 9–25.

145

Sagar R., Kitchin R. Selective silencing of eukaryotic gene expression. Science 1975; 189: 426–433.

146

Holliday R. The inheritance of epigenetic defects. Science 1987; 238:163–170.

147

Jablonka E., Lamb M. J. The inheritance of acquired epigenetic variations. Journal of Theoretical Biology 1989; 139: 69–83.

148

Maynard Smith J. Models of a dual inheritance system. Journal of Theoretical Biology 1990; 143: 41–53.

149

Jablonka E., Lachmann M., Lamb M.J. Evidence, mechanisms and models for the inheritance of acquire characteristics. Journal of Theoretical Biology 1992; 158: 245–68.

150

Smith J.M, Szathmáry E. The Origins of Life. Oxford: Oxford University Press, 1999.

151

Jablonka E., Lamb M.J. Epigenetic Inheritance and Evolution: The Lamarckian Dimension. Oxford University Press, Oxford, 1995.

152

Jablonka E., Lamb M. J. Evolution in Four Dimensions. Cambridge, Massachusetts, and London: the MIT Press, 2005.

153

Jablonka E., Raz G. Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. In press, The Quarterly Review of Biology 2009; 84 (2): 31–176.

154

Gilberts. F., Epel D. Ecological Developmental Biology. Sunderland, Massachusetts: Sinauer Associates Inc, 2009: 8.

155

Grant-Downton R.T., Dickinson H. G. Epigenetics and its implications for plant biology. 1. The epigenetic network in plants. Annals of Botany 2005; 96: 1143–64. Grant-Downton R. T., Dickinson H. G. Epigenetics and its implications for plant biology. 2. The «epigenetic epiphany»: epigenetics, evolution and beyond. Annals of Botany 2006; 97: 11–27.

156

Wilson A. G. Epigenetic regulation of gene expression in the inflammatory response and relevance to common diseases. Journal of Periodontology 2008; 79: 1514–9.

157

Godwin J., Luckenbach J.A., Borski R.J. Ecology meets endocrinology: environmental sex determination in fishes. Evolutionary Development 2003; 5 (1): 40–49.